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Introduction

Welcome to OpenSpecimen 101!

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Primary samples that are collected directly from a participant are typically processed into other sample types which are either stored or aliquoted and stored.(expand below for explanation)

Expand
titleSample Lineage

This is an example of a typical lifecycle of whole blood processed into serum or DNA and then aliquotted.

In OpenSpecimen, this hierarchical relationship is represented in a parent-child structure. Samples of any lineage can be parents of additional samples. So these relationships do not stop at the aliquot level.

  • If a specimen type changes from the parent to the child, then the child sample is ‘Derived’ from the parent.

  • If the specimen type does not change, the child specimen is considered an ‘Aliquot’.

For instance, it’s possible to make a primary cultured cell line from a frozen aliquot of PBMCs. This relationship is captured by creating a derivative from an aliquot.

OpenSpecimen uses colored dots as a visual indicator of status to show the status of a sample:

  • (green) = sample available

  • (red) = sample processed into another product and is no longer available (ie,closed)

  • (yellow) = pending

  • (grey) = missed or not collected

  • (pink) = pooled

  • (purple) = reserved

  • (blue) = distributed

 

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Click on the topics below to get started!

Table of Contents

  1. Access OpenSpecimen

  2. Navigate a Collection Protocol

  3. Register a Participant

  4. Record Visit

  5. Collect Samples

  6. Collect Derivatives and Aliquots

  7. Store or Transfer Specimens

  8. Create Boxes

  9. Using Queries